Index

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W

warning(String, Object...) - Static method in class pt.ist.phylolib.logging.Log

Logs the given warning message.

weight(NeighbourJoining.Cluster) - Method in class pt.ist.phylolib.command.algorithm.nj.NeighbourJoining

Gets the weight of a given cluster.

weight(NeighbourJoining.Cluster) - Method in class pt.ist.phylolib.command.algorithm.nj.SaitouNei

weight(NeighbourJoining.Cluster) - Method in class pt.ist.phylolib.command.algorithm.nj.StudierKeppler

weight(NeighbourJoining.Cluster) - Method in class pt.ist.phylolib.command.algorithm.nj.UNJ

WPGMA - Class in pt.ist.phylolib.command.algorithm.gcp

Responsible for calculating a phylogenetic tree from a distance matrix using the Weighted Pair Group Method with Arithmetic-mean algorithm.

WPGMA() - Constructor for class pt.ist.phylolib.command.algorithm.gcp.WPGMA

WPGMC - Class in pt.ist.phylolib.command.algorithm.gcp

Responsible for calculating a phylogenetic tree from a distance matrix using the Weighted Pair Group Method with Centroid algorithm.

WPGMC() - Constructor for class pt.ist.phylolib.command.algorithm.gcp.WPGMC

write(Options, T, Data) - Static method in interface pt.ist.phylolib.data.IWriter

Writes a value from an option of the given data type in the given options.

WRITE - Static variable in interface pt.ist.phylolib.data.IWriter

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