Index

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O

Optimization - Class in pt.ist.phylolib.command.optimization

Responsible for optimizing a phylogenetic tree into another.

Optimization() - Constructor for class pt.ist.phylolib.command.optimization.Optimization

OPTIMIZATION - pt.ist.phylolib.cli.Command

option() - Method in enum pt.ist.phylolib.cli.Data

Option - Enum in pt.ist.phylolib.cli

Enumerates the available options with their respective alias and format.

options() - Method in class pt.ist.phylolib.cli.Parameters

Options - Class in pt.ist.phylolib.cli

Represents the options of a command as keys and values.

Options() - Constructor for class pt.ist.phylolib.cli.Options

OUT - pt.ist.phylolib.cli.Option

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