C-Index

C

CL - Class in pt.ist.phylolib.command.algorithm.gcp: Responsible for calculating a phylogenetic tree from a distance matrix using the Complete-Linkage algorithm.
CL() - Constructor for class pt.ist.phylolib.command.algorithm.gcp.CL
Command - Enum in pt.ist.phylolib.cli: Enumerates the available commands with their respective repeatability and class.
COMMAND - Static variable in interface pt.ist.phylolib.command.ICommand
Context - Class in pt.ist.phylolib.data: Represents the context of the program with the three different data types used.
Context() - Constructor for class pt.ist.phylolib.data.Context
correct(double) - Method in class pt.ist.phylolib.command.correction.Correction: Corrects the given phylogenetic distance.
correct(double) - Method in class pt.ist.phylolib.command.correction.JukesCantor
correct(Matrix.ICorrection) - Method in class pt.ist.phylolib.data.matrix.Matrix: Gets a distance matrix corrected according to the given correction formula.
Correction - Class in pt.ist.phylolib.command.correction: Responsible for correcting a distance matrix into another.
Correction() - Constructor for class pt.ist.phylolib.command.correction.Correction
CORRECTION - pt.ist.phylolib.cli.Command

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