Index

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N

NATURAL - pt.ist.phylolib.cli.Format

NeighbourJoining - Class in pt.ist.phylolib.command.algorithm.nj

Responsible for calculating a phylogenetic tree from a distance matrix using the Neighbour Joining algorithm.

NeighbourJoining() - Constructor for class pt.ist.phylolib.command.algorithm.nj.NeighbourJoining

NeighbourJoining.Cluster - Class in pt.ist.phylolib.command.algorithm.nj

Represents a cluster as the amount of elements in it, the total length of the cluster and the distances to other clusters.

Newick - Class in pt.ist.phylolib.data.tree

Responsible for parsing phylogenetic trees from and to Strings in Newick format.

Newick() - Constructor for class pt.ist.phylolib.data.tree.Newick

Nexus - Class in pt.ist.phylolib.data.tree

Responsible for parsing phylogenetic trees from and to Strings in Nexus format.

Nexus() - Constructor for class pt.ist.phylolib.data.tree.Nexus

NoCommandException - Exception in pt.ist.phylolib.exception

Represents an error derived from the definition of no command in the command line arguments.

NoCommandException() - Constructor for exception pt.ist.phylolib.exception.NoCommandException

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