Index

A C D E F G H I J K L M N O P R S T U V W _
All Classes All Packages

L

lambda(NeighbourJoining.Cluster, NeighbourJoining.Cluster) - Method in class pt.ist.phylolib.command.algorithm.nj.NeighbourJoining

Gets the proportion of a given cluster according to another.

lambda(NeighbourJoining.Cluster, NeighbourJoining.Cluster) - Method in class pt.ist.phylolib.command.algorithm.nj.SaitouNei

lambda(NeighbourJoining.Cluster, NeighbourJoining.Cluster) - Method in class pt.ist.phylolib.command.algorithm.nj.StudierKeppler

lambda(NeighbourJoining.Cluster, NeighbourJoining.Cluster) - Method in class pt.ist.phylolib.command.algorithm.nj.UNJ

LBR - Class in pt.ist.phylolib.command.optimization

Responsible for optimizing a phylogenetic tree into another using the Local Branch Recrafting algorithm.

LBR() - Constructor for class pt.ist.phylolib.command.optimization.LBR

length(double) - Method in class pt.ist.phylolib.command.algorithm.nj.NeighbourJoining

Gets the length corresponding to the given distance.

length(double) - Method in class pt.ist.phylolib.command.algorithm.nj.SaitouNei

length(double) - Method in class pt.ist.phylolib.command.algorithm.nj.StudierKeppler

length(double) - Method in class pt.ist.phylolib.command.algorithm.nj.UNJ

locus(int) - Method in class pt.ist.phylolib.data.dataset.Profile

Log - Class in pt.ist.phylolib.logging

Responsible for the logging of information in the program.

Log() - Constructor for class pt.ist.phylolib.logging.Log

LVS - pt.ist.phylolib.cli.Option

A C D E F G H I J K L M N O P R S T U V W _
All Classes All Packages