DatasetParser

java.lang.Object

pt.ist.phylolib.data.dataset.DatasetParser

All Implemented Interfaces:: IReader<Dataset>

Direct Known Subclasses:: FASTA, ML, SNP

public abstract class DatasetParser
extends java.lang.Object
implements IReader<Dataset>

Responsible for parsing phylogenetic datasets from Strings.

Field Summary

Fields inherited from interface pt.ist.phylolib.data.IReader
FAILED, FINISHED, READ, STARTED
Constructor Summary

Constructors

Constructor Description

DatasetParser()

Method Summary

Modifier and Type	Method	Description
`protected void`	`init(java.util.Iterator<java.lang.String> iterator)`	Initializes the state of the processor by parsing the first lines of the dataset.
`protected abstract Profile`	`parse(java.util.Iterator<java.lang.String> iterator)`	Parses one profile from the given Strings.
`Dataset`	`parse(java.util.stream.Stream<java.lang.String> data)`	Parses the input data into an object.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- DatasetParser
  
  public DatasetParser()
Method Details
- parse
  
  public Dataset parse(java.util.stream.Stream<java.lang.String> data)
  
  Description copied from interface: IReader
  
  Parses the input data into an object.
  
  Specified by:
  
  parse in interface IReader<Dataset>
  
  Parameters:
  
  data - the input data to parse
  
  Returns:
  
  the object resultant from parsing the input data
- init
  
  protected void init(java.util.Iterator<java.lang.String> iterator)
  
  Initializes the state of the processor by parsing the first lines of the dataset.
  By default does not parse anything.
  
  Parameters:
  
  iterator - the iterator containing the lines of the dataset
- parse
  
  protected abstract Profile parse(java.util.Iterator<java.lang.String> iterator)
  
  Parses one profile from the given Strings.
  
  Parameters:
  
  iterator - the iterator containing the lines of the dataset
  
  Returns:
  
  a new profile resultant from parsing lines of the dataset